Closed anemartinezlarrinaga2898 closed 11 months ago
Hi @anemartinezlarrinaga2898
the "excluded cell types are:"
message is a warning message, not an error message. You can just continue the analysis.
Note that we advise against using findMarkers = TRUE
. This option is more included for internal testing/comparisons and not for use by end users.
Hello!
Im running multinitchenet in a single cell object where I have three groups in different cell types. However when I run the
DE_info <- get_DE_info(sce = sce, sample_id = sample_id, group_id = group_id, celltype_id = celltype_id, batches = batches, covariates = covariates, contrasts_oi = contrasts_oi, min_cells = min_cells, findMarkers = TRUE)
I get the following error: ""excluded cell types are:"
How should I proceed? Should this cell types be removed? What is the community doing or the library guys doing?