inner_join issue

[ckim-nkx]

Hello,

I'm using the latest version 1.0.3, but I'm getting an inner join issue similar to prior closed issue, I've attached where it stops

[1] "Calculate differential expression for all cell types"
[1] "DE analysis is done:"
[1] "included cell types are:"
 [1] "CD8.TEM"       "CD4.TEM"       "CD4.TCM"       "HSPC"          "NK"           
 [6] "CD4.CTL"       "Treg"          "CD8.TCM"       "NK_CD56bright" "CD4.Naive"    
[11] "CD8.Naive"     "ILC"           "CD14.Mono"     "cDC2"          "Platelet"     
[16] "MAIT"          "gdT"           "B.naive"      
[1] "Make diagnostic abundance plots + Calculate expression information"
[1] "Calculate NicheNet ligand activities and ligand-target links"
[1] "Combine all the information in prioritization tables"
Error in `dplyr::inner_join()`:
! Can't convert `out[merge]$target` <logical> to match type of `target` <character>.

Best, Chang

[browaeysrobin]

Hi @ckim-nkx

Can you provide the following information:

1) Based on which vignette did you run the analysis? Which function lead to the error? 2) Does this vignette give the same error on the vignette data or only on your own data? 3) Did you change any of the default parameters used in that vignette? 4) Can you give your sessionInfo()?

[browaeysrobin]

Closed due to inactivity.