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saeyslab / multinichenetr

MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
GNU General Public License v3.0
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How can I save the high resolution plots generated from multinichenetr with R code? #50

Closed kaarg2 closed 8 months ago

kaarg2 commented 8 months ago

I'm running multinichenetr on a high computing cluster.I would like to save the plots generated from multinichenetr workflow with R codes instead of Rstudio interface. Is there a way I can save the plots non-interactively without showing the plots? Thank you.

browaeysrobin commented 8 months ago

Hi @kaarg2

At the end of the readme in the section "Learning to use multinichenetr", you see a link to two scripts that we use. One to run the analysis and calculations on a high computing cluster. One to read in the output and make visualizations locally.