Intercellular regulatory network systems view-graph_plot errored

[Chenium123]

Happy New Year! The R package you provided is very useful! However, I encountered an error in the final step while generating images using code similar to threewise_analysis_MISC.md. The error message is as follows:

graph_plot$plot Error in ggraph::geom_edge_loop(): ! Problem while computing stat. ℹ Error occurred in the 2nd layer. Caused by error in seq_len(): ! argument must be coercible to non-negative integer Run rlang::last_trace() to see where the error occurred. Warning message: In max(f) : no non-missing arguments to max; returning -Inf

rlang::last_trace(drop = FALSE) <error/rlang_error> Error in ggraph::geom_edge_loop(): ! Problem while computing stat. ℹ Error occurred in the 2nd layer. Caused by error in seq_len(): ! argument must be coercible to non-negative integer

Backtrace: ▆

1. ├─base (local) <fn>(x)
2. ├─ggplot2:::print.ggplot(x)
3. │ ├─ggplot2::ggplot_build(x)
4. │ ├─ggraph:::ggplot_build.ggraph(x)
5. │ ├─base::NextMethod()
6. │ └─ggplot2:::ggplot_build.ggplot(x)
7. │ └─ggplot2:::by_layer(...)
8. │ ├─rlang::try_fetch(...)
9. │ │ ├─base::tryCatch(...)
10. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
11. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
12. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
13. │ │ └─base::withCallingHandlers(...)
14. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
15. │ └─l$compute_statistic(d, layout)
16. │ └─ggplot2 (local) compute_statistic(..., self = self)
17. │ └─self$stat$compute_layer(data, self$computed_stat_params, layout)
18. │ └─ggplot2 (local) compute_layer(..., self = self)
19. │ └─ggplot2:::dapply(...)
20. │ └─ggplot2:::split_with_index(seq_len(nrow(df)), ids)
21. └─base::.handleSimpleError(...)
22. └─rlang (local) h(simpleError(msg, call))
23. └─handlers[1L]
24. └─cli::cli_abort(...)
25. └─rlang::abort(...)

The above is the error message I received. Do I need to check my data? There were no errors in the previous processing steps. If you need any additional information, please let me know. Thank you for your help!

[browaeysrobin]

Hi @Chenium123

Can you check #10 and let me know whether that fix fixed your issue?