Closed haotian-zhuang closed 6 months ago
hi @haotian-zhuang
Yes, that was indeed the setting we used for the paper.
Hi Robin @browaeysrobin,
Thank you for the prompt reply! Could you explain more why setting group = c("OnE","OnNE")) for Fig 3a? For example, why setting group = "OnNE" represents the "Interactions that increase during therapy in patients without expansion"?
And if keeping the "contrast" but setting group = c("OnE","PreE")), for example, how to interpret the two figures drawn?
Thanks!
Dear Robin @browaeysrobin,
Thank you for the great tool. To reproduce the Fig 3a of the breast cancer example, I wonder how to set the "group" column in the "contrast_tbl"? The vignette uses the following setting, but is this the same setting to generate the Fig 3a? Thanks!
contrast_tbl = tibble(contrast = c("(OnE-PreE)-(OnNE-PreNE)", "(OnNE-PreNE)-(OnE-PreE)"), group = c("OnE","OnNE"))