saeyslab / multinichenetr

MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
GNU General Public License v3.0
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Gene Pairs Below Threshold Appear in Plot #92

Open DarioS opened 1 month ago

DarioS commented 1 month ago

I used filtering of 80%

highFrequencyIDs <- CCI$prioritization_tables$group_prioritization_tbl %>%
                    filter(fraction_expressing_ligand_receptor >= 0.8) %>% pull(id)
priorityTable <- get_top_n_lr_pairs(CCI$prioritization_tables, top_n = 30, rank_per_group = FALSE) %>%
                 filter(id %in% highFrequencyIDs)
make_sample_lr_prod_activity_plots_Omnipath(CCI$prioritization_tables, priorityTable %>% inner_join(lr_network_all))

image but some rows (orange) have more missing samples. Also, what does no-dot (pink) mean?