search

saeyslab / napari-sparrow

Other
17 stars 0 forks source link

Output how many transcripts are used #106

Open lopollar opened 1 year ago

lopollar commented 1 year ago

In the plot of the transcripts, add a line with the total amount of transcripts that were skipped, or plot it in the figure. YOu see the mean per gene, which might be a better metric.

I would print out the mean per gene kept and the total kept!

lopollar commented 1 year ago

make a column in var per gene on how many trasncript are kept in the segmentation mask