Open lopollar opened 1 year ago
Check if we can add columns to the points layer (Which I think is possible because of the gene column).
Then, if this column is added, adapt the allocation: replace cell_counts = combined_partitions.groupby(["cells", "gene"]).size()
by if 'counts' in df.columns: cell_counts=df.groupby(["cells", "gene"]).sum()['counts'] else: cell_counts = df.groupby(["cells", "gene"]).size()
and that should be it!
Check if we can add columns to the points layer (Which I think is possible because of the gene column).
Then, if this column is added, adapt the allocation: replace cell_counts = combined_partitions.groupby(["cells", "gene"]).size()
by if 'counts' in df.columns: cell_counts=df.groupby(["cells", "gene"]).sum()['counts'] else:
cell_counts = df.groupby(["cells", "gene"]).size()
and that should be it!