Closed lopollar closed 1 year ago
should be fixed by https://github.com/saeyslab/napari-sparrow/commit/9df0b9dd4948c54e4a38d09c8edd36fc07214d66 . Seems like a bug in the apply function of squidpy. Now using map_overlap of dask directly.
Tested on complete vizgen image, processed as one slice. Plots of two subsets below:
The chunking in the CLAHE function really causes problems, even when setting the depth high enough. With a depth of 8192, I still get tiling effects where there were no tiling effects before..