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saeyslab / napari-sparrow

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Installation problems solved #133

Closed WoutVanhenden closed 11 months ago

WoutVanhenden commented 1 year ago

Depending on the versions of the previously installed packages, it could be necessary to install the following packages as well: conda install fsspec=2023.6.0 conda install -c conda-forge ipywidgets pip install OmegaConf

ArneDefauw commented 1 year ago

Should be fixed om main ( https://github.com/saeyslab/napari-sparrow/commit/4cc523b794a9c31dab55d70dbf238739fd85d73d )

For running from cli, you can also run pip install -e '.[cli]' this will install hydra ( and OmegaConf).

Do we need ipywidgets for running the notebooks as they currently are?

Lucas-Maciel commented 11 months ago

Hi Arne Just to let you know, I installed sparrow on windows using mamba and I still had to run pip install OmegaConf. I used commit d8dada4.

ArneDefauw commented 11 months ago

pip install -e '.[cli]' will indeed not work on windows, because hydra-submitit-launcher is not supported on windows. I will add OmegaConf to the default requirements in setup.cfg. Thanks!

ArneDefauw commented 11 months ago

Should be fixed by https://github.com/saeyslab/napari-sparrow/pull/149