saeyslab / napari-sparrow

Other
17 stars 0 forks source link

Add functionality for specifying channel names when saving to spatialdata Zarr #151

Closed SilverViking closed 10 months ago

SilverViking commented 11 months ago

The current use case is for converting .qptiff files to .zarr that can be read afterwards with spatialdata. Since sparrow currently does not support reading qptiff files, an external library is used for reading the qptiff and its metadata, and sparrow is then used to write the Zarr by passing a dask array with the pixel data, and the channel names to create_sdata().