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saeyslab / nichenetr

NicheNet: predict active ligand-target links between interacting cells
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Replacing Gene regulatory network #194

Closed anthonybejjani closed 11 months ago

anthonybejjani commented 1 year ago

Hello,

I am interested in running NicheNet but I would like to replace the GRN used with a custom one. I can't find a vignette or information anywhere regarding how to do this. Is there a function for it? Thank you for your help!

csangara commented 1 year ago

Hi, sorry for the late reply.

Have you checked out the model_construction vignette? You can use the construct_weighted_networks function with gr_network as your own.

Hope this helps!