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saeyslab / nichenetr

NicheNet: predict active ligand-target links between interacting cells
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Is Peaks a viable default assay of interest> #229

Closed brandonkim1 closed 1 year ago

brandonkim1 commented 1 year ago

Hi, I am running a NicheNet analysis of only scATAC-seq data, without any integration of scRNA data.

Is it possible to use peaks as the assay_oi instead of RNA?