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saeyslab / nichenetr

NicheNet: predict active ligand-target links between interacting cells
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Error when passing the recorrect_umi argument in get_lfc_celltype #282

Open NeuralBind opened 4 weeks ago

NeuralBind commented 4 weeks ago

Hey, i would like to pass the FindMarkers argument reccorect_umi= F, in the get_lfc_celltype. But it seems to not recognize the argument. Is there maybe a workaround?

Cheers!

csangara commented 1 week ago

Hi, two things you could try: 1) Check whether there was a typo in the argument (i.e., has to be recorrect_umi = F instead of reccorect_umi= F) 2) Check if you have the latest NicheNet version (v2.1.5); in older versions it was not possible to pass extra arguments to FindMarkers

If both of these fail, you can try copying the code of get_lfc_celltype and directly give the argument to FindMarkers.