Clean up installation - Githubissues

saeyslab / nichenetr

NicheNet: predict active ligand-target links between interacting cells

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Closed csangara closed 1 month ago

csangara commented 2 months ago

Remove limma dependency
- Added conditional in classification_evaluation_continuous_pred() to only calculate GST if limma is installed
- Added checks in evaluate_model() and evaluate_model_cv() to check for "mean_rank_GST_log_pval" in column names
- Added note in evaluate_target_prediction() and the model_evaluation.Rmd vignette about this
Add biocViews to DESCRIPTION so ComplexHeatmap is automatically installed

csangara commented 1 month ago

Checks passed for all recent release, it only failed for the previous release due to rjson dependency from ComplexHeatmap.