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saezlab / CollecTRI

Gene regulatory network containing signed transcription factor-target gene interactions
GNU General Public License v3.0
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commercial use of collectri #17

Closed annarerra closed 1 month ago

annarerra commented 7 months ago

Hello,

First of all, thank you for developing this nice tool! I am working at a company and we would like to use collectri for our analyses. I checked the licenses of the included tools and I found out that the SIGNOR is not allowed to be used commercially. Is there a way to remove this package when using collectri and continue with the rest?

Thank you for your help :)

PauBadiaM commented 7 months ago

Hi @annarerra,

Luckily SIGNOR recently made changes to their license which allows commercial use (check https://github.com/saezlab/CollecTRI/issues/15#issuecomment-2075199876), so there is no need to remove it anymore.

annarerra commented 7 months ago

That's great! And what about DorothEA? You are using a version here which is called DorothEA A (Pazar - LGPLv3 , ORegAnno -LGPLv3, HTRIdb -LGPLv3, SIGNOR -CC BY 4.0 , DoRothEA-reviews - CC BY 4.0). There are no restrictions, right?

Thank you :)

smuellerd commented 7 months ago

Hi @annarerra,

yes exactly. CollecTRI only includes interactions from DoRothEA's confidence level A which have no restrictions.