enable Github actions - Githubissues

saezlab / MetaProViz

R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.

https://saezlab.github.io/MetaProViz/

GNU General Public License v3.0

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enable Github actions #33

Closed ChristinaSchmidt1 closed 1 year ago

ChristinaSchmidt1 commented 1 year ago

This is similar to devtools::check() and tests if MetaProViz runs on different machines (windows, linux, mac) and if it passes the tests of bioconductor. As part of this test also make the vignette and .io --> will be tested.

Add the outcome of those tests to the .rmd

ChristinaSchmidt1 commented 1 year ago

In check-bioc.yml:

disabled the artifacts to be saved as Attila explained that this takes away too much storage
set has_testthat: 'false'
set run_pkgdown: 'false'

In order to use run_pkgdown I need to:

generate the needed items for the .io page. There is a package usethis() that will generate the needed files automatically in the right structure that will be needed.
in order to run pkgdown::, I will need find out how to install/enable git on windows command line or the R studio terminal!

ChristinaSchmidt1 commented 1 year ago

This will also be used to create the github.io page by creating the gh-page to a new branch. Liana has a github actions only dedicated to this.

ChristinaSchmidt1 commented 1 year ago

This will all be enabled when it goes online and is moved to the general To Do list.