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saezlab / MetaProViz

R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
https://saezlab.github.io/MetaProViz/
GNU General Public License v3.0
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Use VizFunctions to generate the QC plots #57

Closed ChristinaSchmidt1 closed 1 year ago

ChristinaSchmidt1 commented 1 year ago

Within some function we generate some basic plots. We should:

  1. Preprocessing: use MetaProViz::VizPCA() within the function
  2. DMA: use MetaProViz::VizVolcano() to generate the overview plot within the function
dprymidis commented 1 year ago

Added Save_as_Plot = NULL (In all plotting functions except alluvial) in order to be able to use the PCA and Volcano functions within other functions

dprymidis commented 1 year ago

This is done. PCA in preprocessing calls VizPCA and DMA calls VizVilcano with Save_as_Plot=NULL. Also, the folders PCA and Volcano are not created.