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saezlab / MetaProViz

R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
https://saezlab.github.io/MetaProViz/
GNU General Public License v3.0
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Viz functions: Export two plot lists #66

Closed ChristinaSchmidt1 closed 7 months ago

ChristinaSchmidt1 commented 11 months ago
  1. "Plots": Plot with standard grids as given by ggplot. This version can be easily modified by the user as the ability to change theme, overlay cutoff-lines or other things is the standard ggplot syntax and way. After they have done their changes they could use our helper function if they want a similar grid format to save their plot in.
  2. "PublicationReadyPlots": Plot with modified grid by us for publication ready format. Here the user has not all abilities to change the plot further to their liking.

IMPORTANT: When this is done we need to make sure we return/save the right plots in the other functions that use Viz functions. So we need to adapt the code there to extract the plots from the lists.

ChristinaSchmidt1 commented 7 months ago

Add to description of this, that this exported list can be used to combine plots into a single plot using facet_grid or patchwork::wrap_plots. This could be done randomly or using additional information about the metabolites (e.g. pathways, ...)

Write a function that can use the ggplots from the list and create the facet grids

ChristinaSchmidt1 commented 7 months ago

Export is now possible!