search

saezlab / MetaProViz

R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
https://saezlab.github.io/MetaProViz/
GNU General Public License v3.0
8 stars 0 forks source link

Functional analysis: Add MCA function to make cluster column for one dataset #67

Open ChristinaSchmidt1 opened 11 months ago

ChristinaSchmidt1 commented 11 months ago

Input: DMA results Parameters: You can pass selection column (e.g. Log2FC, p.adj, t.val,...) Usage: Based on the selection parameters we assign a cluster name (New column "Cluster" will be added to DF). E.g. if Log2F cutoff = 1 and p.adj cutoff = 0.05, metabolites with Log2FC > 1 and p.adj <0.05 will get the assigned "UP",...

If CoRe=TRUE, we can do this by taking into account also the release/conusmed column.

ChristinaSchmidt1 commented 7 months ago

We could add something simple automatically to the DMA function results.