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saezlab / MetaProViz

R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
https://saezlab.github.io/MetaProViz/
GNU General Public License v3.0
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Enable the usability with SummarizedExperiment for all the functions. #70

Open ChristinaSchmidt1 opened 1 year ago

ChristinaSchmidt1 commented 1 year ago

I think SummarizedExperiment will be sufficient as we are looking at metabolomics solely having one DF at a time. Yet, maybe with multiple DF coming from all-vs-all differential analyiss also MultiAssayExperiment could be of interest. (It could also work with both, SummarizedExperiment and MultiAssayExperiment, as they are related).

Is important to enable high troughput and to connect with other packages that return this type of data objects.