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saezlab / OmnipathR

R client for the OmniPath web service
https://r.omnipathdb.org/
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OmnipathR.rdb' is corrupt #69

Closed beetlejuice007 closed 1 year ago

beetlejuice007 commented 1 year ago 
          After running

devtools::install_github('saezlab/OmnipathR') net <- get_dorothea(organism='human', levels=c('A', 'B', 'C'))

Error in original_appender_console(lines) : lazy-load database 'C:/xxxR/win-library/4.2/OmnipathR/R/OmnipathR.rdb' is corrupt In addition: Warning messages: 1: 'OmnipathR::import_dorothea_interactions' is deprecated. Use 'dorothea' instead. See help("Deprecated") 2: In original_appender_console(lines) : restarting interrupted promise evaluation 3: In original_appender_console(lines) : internal error -3 in R_decompress1

_Originally posted by @hemantgujar in https://github.com/saezlab/OmnipathR/issues/68

deeenes commented 1 year ago

Have you tried to restart your R session? If that doesn't work, delete the rdb file and install the package again, and restart the session. I would expect that will resolve this.

beetlejuice007 commented 1 year ago

thanks. restarting r and computer worked for me.