Open complexgenome opened 3 months ago
Hi there, I use following command for core components:
SLAPE.core_components(PFP=kegg_SLAPE_analysis, EM=df_mutation, PATH='/data1/users/sanjeev/slapenrich/kegg_database/n786_cov80_', exclcovth=80,fdrth=5, PATH_COLLECTION = KEGG_PATH)
I get error as:
Error in PATH_COLLECTION$HGNC_SYMBOL[[PFP$pathway_id[i]]] : attempt to select less than one element in get1index
I believe it's because no pathway survived filtering of both FDR as well as coverage.
Hi there, I use following command for core components:
I get error as:
I believe it's because no pathway survived filtering of both FDR as well as coverage.