Integrate Phosphoproteomics and transcriptomics studies

saezlab / cosmosR

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

https://saezlab.github.io/cosmosR/

GNU General Public License v3.0

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Integrate Phosphoproteomics and transcriptomics studies #34

Open Kriti1594 opened 8 months ago

Kriti1594 commented 8 months ago

Hi saezlab,

Could you please guide me how to integrate phosphoproteomics and transcriptomics data together using CosmosR?

I have generated kinase enrichment using KSEAapp and transcription factors from decoupleR (https://saezlab.github.io/decoupleR/articles/tf_bk.html) using these tutorials. Could you help me how I can include these tools output in cosmosR package.

Thanks.