problem installing from github on windows

[adugourd]

It works well when i install on Mac, but on windows I get this error : Installing package into ‘C:/Users/omish/Documents/R/win-library/4.0’ (as ‘lib’ is unspecified)

• installing source package 'cosmos' ... using staged installation R inst byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cosmos' finding HTML links ... done binarize_with_sign html
  check_CARNIVAL_options html
  check_COSMOS_inputs html
  check_gene_names html
  check_inputs_for_CARNIVAL html
  check_network_data_coverage html
  convert_ensembl_to_entrezid html
  convert_genesymbols_to_entrezid html
  cosmos_data html
  default_CARNIVAL_options html
  finding level-2 HTML links ... done

Rd warning: C:/Users/omish/AppData/Local/Temp/Rtmpc1BlW3/R.INSTALL84c259e5e56/cosmos/man/default_CARNIVAL_options.Rd:11: missing link 'CARNIVAL::runCARNIVAL' discretize_input html
filter_pkn_expressed_genes html
filter_transcriptional_regulations html
format_COSMOS_results html
get_TF_activity_from_CARNIVAL html
keep_controllable_neighbours html
keep_observable_neighbours html
limit_string_vec html
load_meta_pkn html
load_tf_regulon_dorothea html
load_tf_regulon_dorothea_omnipath html
new_cosmos_data html
prepare_metabolomics_data html
Rd warning: C:/Users/omish/AppData/Local/Temp/Rtmpc1BlW3/R.INSTALL84c259e5e56/cosmos/man/prepare_metabolomics_data.Rd:15: missing link 'load_meta_pkn()' preprocess_COSMOS_core html
Rd warning: C:/Users/omish/AppData/Local/Temp/Rtmpc1BlW3/R.INSTALL84c259e5e56/cosmos/man/preprocess_COSMOS_core.Rd:70: missing link 'default_CARNIVAL_options()' preprocess_COSMOS_metabolism_to_signaling html
Rd warning: C:/Users/omish/AppData/Local/Temp/Rtmpc1BlW3/R.INSTALL84c259e5e56/cosmos/man/preprocess_COSMOS_metabolism_to_signaling.Rd:62: missing link 'default_CARNIVAL_options()' preprocess_COSMOS_signaling_to_metabolism html
Rd warning: C:/Users/omish/AppData/Local/Temp/Rtmpc1BlW3/R.INSTALL84c259e5e56/cosmos/man/preprocess_COSMOS_signaling_to_metabolism.Rd:62: missing link 'default_CARNIVAL_options()' print.cosmos_data html
process_CARNIVAL_results html
runCARNIVAL_wrapper html
Rd warning: C:/Users/omish/AppData/Local/Temp/Rtmpc1BlW3/R.INSTALL84c259e5e56/cosmos/man/runCARNIVAL_wrapper.Rd:20: missing link 'CARNIVAL::runCARNIVAL' Rd warning: C:/Users/omish/AppData/Local/Temp/Rtmpc1BlW3/R.INSTALL84c259e5e56/cosmos/man/runCARNIVAL_wrapper.Rd:22: missing link 'CARNIVAL::runCARNIVAL' Rd warning: C:/Users/omish/AppData/Local/Temp/Rtmpc1BlW3/R.INSTALL84c259e5e56/cosmos/man/runCARNIVAL_wrapper.Rd:24: missing link 'CARNIVAL::runCARNIVAL' run_COSMOS_metabolism_to_signaling html
Rd warning: C:/Users/omish/AppData/Local/Temp/Rtmpc1BlW3/R.INSTALL84c259e5e56/cosmos/man/run_COSMOS_metabolism_to_signaling.Rd:42: missing link 'preprocess_COSMOS' Rd warning: C:/Users/omish/AppData/Local/Temp/Rtmpc1BlW3/R.INSTALL84c259e5e56/cosmos/man/run_COSMOS_metabolism_to_signaling.Rd:28: missing link 'default_CARNIVAL_options()' run_COSMOS_signaling_to_metabolism html
Error: C:/Users/omish/AppData/Local/Temp/Rtmpc1BlW3/R.INSTALL84c259e5e56/cosmos/man/run_COSMOS_signaling_to_metabolism.Rd:14: Bad \link text

• removing 'C:/Users/omish/Documents/R/win-library/4.0/cosmos' Error: Failed to install 'cosmos' from GitHub: (converted from warning) installation of package ‘C:/Users/omish/AppData/Local/Temp/RtmpuOziHB/file4e984c9542b1/cosmos_0.1.5.tar.gz’ had non-zero exit status

My session info :

• Session info ---------------------------------------------------------------------------------------------------------- setting value
  version R version 4.0.0 (2020-04-24) os Windows 10 x64
  system x86_64, mingw32
  ui RStudio
  language (EN)
  collate English_Germany.1252
  ctype English_Germany.1252
  tz Europe/Berlin
  date 2020-11-11

• Packages -------------------------------------------------------------------------------------------------------------- package version date lib source
  assertthat 0.2.1 2019-03-21 [1] CRAN (R 4.0.0) backports 1.1.7 2020-05-13 [1] CRAN (R 4.0.0) callr 3.5.1 2020-10-13 [1] CRAN (R 4.0.3) cli 2.0.2 2020-02-28 [1] CRAN (R 4.0.0) crayon 1.3.4 2017-09-16 [1] CRAN (R 4.0.0) curl 4.3 2019-12-02 [1] CRAN (R 4.0.3) desc 1.2.0 2018-05-01 [1] CRAN (R 4.0.2) devtools 2.3.2 2020-09-18 [1] CRAN (R 4.0.3) digest 0.6.25 2020-02-23 [1] CRAN (R 4.0.0) ellipsis 0.3.1 2020-05-15 [1] CRAN (R 4.0.2) fansi 0.4.1 2020-01-08 [1] CRAN (R 4.0.0) fs 1.5.0 2020-07-31 [1] CRAN (R 4.0.3) glue 1.4.1 2020-05-13 [1] CRAN (R 4.0.2) magrittr 1.5 2014-11-22 [1] CRAN (R 4.0.0) memoise 1.1.0 2017-04-21 [1] CRAN (R 4.0.3) pkgbuild 1.1.0 2020-07-13 [1] CRAN (R 4.0.3) pkgload 1.1.0 2020-05-29 [1] CRAN (R 4.0.2) prettyunits 1.1.1 2020-01-24 [1] CRAN (R 4.0.2) processx 3.4.4 2020-09-03 [1] CRAN (R 4.0.3) ps 1.3.3 2020-05-08 [1] CRAN (R 4.0.2) R6 2.4.1 2019-11-12 [1] CRAN (R 4.0.0) remotes 2.2.0 2020-07-21 [1] CRAN (R 4.0.3) rlang 0.4.8 2020-10-08 [1] CRAN (R 4.0.3) rprojroot 1.3-2 2018-01-03 [1] CRAN (R 4.0.2) rstudioapi 0.11 2020-02-07 [1] CRAN (R 4.0.2) sessioninfo 1.1.1 2018-11-05 [1] CRAN (R 4.0.3) testthat 2.3.2 2020-03-02 [1] CRAN (R 4.0.2) usethis * 1.6.3 2020-09-17 [1] CRAN (R 4.0.3) withr 2.2.0 2020-04-20 [1] CRAN (R 4.0.2)

[1] C:/Users/omish/Documents/R/win-library/4.0 [2] C:/Program Files/R/R-4.0.0/library

[gabora]

please check the most recent update. It should have fixed this issue.