Problem running BACKWARD run of COSMOS

saezlab / cosmosR

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

https://saezlab.github.io/cosmosR/

GNU General Public License v3.0

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Problem running BACKWARD run of COSMOS #7

Closed samuelbunga closed 3 years ago

samuelbunga commented 3 years ago

Hi, I am trying to run COSMOS tutorial and installed the cosmos v0.1. While trying to run the command preprocess_COSMOS_metabolism_to_signaling, I'm getting this error message Writing constraints... Error in write_constraints_6(variables = variables, dataMatrix = dataMatrix, : object 'cc1' not found

Could you please help me fix it?

Thanks in advance.

gabora commented 3 years ago

Hi, this is a known issue of CARNIVAL and the bug was fixed on our GitHub repo. Could you please install CARNIVAL from here: Link devtools::install_github("saezlab/CARNIVAL")