Error: Column `likelihood` not found in `.data`

[linanzhang]

I loaded the regulon network from the dorothea package:

## We read Dorothea Regulons for Human
dorothea_regulon_human = get(data("dorothea_hs", package = "dorothea"))
## We obtain the regulons based on interactions with confidence level A, B and C
regulon = dorothea_regulon_human %>% dplyr::filter(confidence %in% c("A","B","C"))

but regulon does not have the column likelihood. How to get the desired input network of decoupleR?

[jvelezmagic]

Hi, @linanzhang! Sorry for the late response.

• One way to solve your problem could include adding a new column full of 1s called likelihood into your network.
• On the other hand, decoupleR has its own built-in solution. Just pass a new parameter called .likelihood = NULL.

Let me know if I can help you with something else! 😋