Vignette build fails due to missing packages

saezlab / decoupleR

R package to infer biological activities from omics data using a collection of methods.

https://saezlab.github.io/decoupleR/

GNU General Public License v3.0

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Vignette build fails due to missing packages #54

Closed deeenes closed 2 years ago

deeenes commented 2 years ago

At least these packages are missing for a successful vignette build: magick, rsvg, GSVA. Should these be in the Suggests section?

PauBadiaM commented 2 years ago

Hi @deeenes

Which version of decoupleR are you using? I do not use magick nor rsvg (I don't even have them installed in the enviroment where I test decoupleR). GSVA is already included in Suggests.

deeenes commented 2 years ago

Sorry, it was my mistake, now I install the dependencies properly: https://status.omnipathdb.org/decoupler/bioc-3.15/2022-04-21/install_deps.out