Closed vntasis closed 2 years ago
Hi @vntasis
Thanks for checking out the package and opening an issue! Indeed there was a bug in the code. You can update it again from:
devtools::install_github('saezlab/decoupleR')
It should work now, else you can reopen this issue.
Brief description I am following one of your tutorials (https://saezlab.github.io/decoupleR/articles/tf_bk.html). When I run the decouple function with just one condition as in the example below, some of the techniques return as condition name the column name ('FC_Pvalue'), while others return the value 'V1' as condition. This creates an inconsistency, with the function providing two consensus values per transcription factor instead of just one (one for 'FC_Pvalue', another for 'V1').
It is not a big deal. The workaround is to not run consensus with the decouple function, correct the inconsistency manually in the 'condition' column, and then run the
run_consensus
function. However, it would make sense to correct this.Example
Thanks