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saezlab / decoupleR

R package to infer biological activities from omics data using a collection of methods.
https://saezlab.github.io/decoupleR/
GNU General Public License v3.0
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Issues retrieving data from PROGENy using decoupleR & OmintpathR #61

Closed Vicbcn2001 closed 2 years ago

Vicbcn2001 commented 2 years ago

Hi,

Just running this instruction:

net <- get_progeny(organism = 'human', top = 100)

is giving this output:

Error in open.connection(con, "rb") : HTTP error 500.

It does in R4.1.0 and R4.2.1. This instruction previously ran fine with the same code. In addition, there is no issue to retrieve the data from dorothea within the same R session with this instruction:

net <- get_dorothea(organism='human', levels=c('A', 'B', 'C'))

Maybe it is a problem in the server specific for the PROGENy dataset.

Thank you Best,

Vicente

PauBadiaM commented 2 years ago

Hi @Vicbcn2001,

Thanks for submitting an issue. Apparently we are having some problems with the OmniPath server currently. @deeenes could you take a look?

deeenes commented 2 years ago

Hi,

It was a transient server issue, sorrry about that, should be fine now.

Denes

Vicbcn2001 commented 2 years ago

Hi,

I just checked the command and it is working fine. Thank you for your support and congratulations for the creation of these great resources!

Vicente