Closed tonyjhlam closed 2 years ago
Hi @tonyjhlam,
Thanks for checking out the package! Unfortunately decoupleR only accepts matrices as input mat
, not data-frames. Whenever I have time I'll write a function that checks for this. Try it with a named matrix (with gene and sample or contrast names) and let me know please. Hope this was helpful.
Thanks @PauBadiaM this seems to have solved the issue.
Getting the following error when running run_gsva()
run_gsva(as.data.frame(expression), network = dre, method='gsva')
unable to find an inherited method for function ‘gsva’ for signature ‘"data.frame", "list"’