Closed dano602 closed 1 year ago
This was an issue in OmnipathR
that developed due to api changes in the latest updates of purrr
and rlang
. Should be fixed now on master
: https://github.com/saezlab/OmnipathR/issues/57
Reinstalling OmnipathR from GitHub solved my issue. Thank you very much for your help. :)
Hello everyone. I have encountered an issue when trying to run get_dorothea function from decoupleR according to this tutorial: https://saezlab.github.io/decoupleR/articles/tf_bk.html When I run net <- get_dorothea(organism='human', levels=c('A', 'B', 'C')) I get this error: Error in
mutate()
: ℹ In argument:n_references = ifelse(...)
. Caused by error inmap()
: ℹ In index: 1. Caused by error in.f()
: ! Arguments in...
must be passed by position, not name. ✖ Problematic argument: • outsep = outsep When I tried to run get_dorothea for the first time, it mentioned missing some packages that I installed and after that, I got stuck with this error message. I tried to install version of decoupleR from both Bioconductor and GitHub, I tried to reinstall dplyr and also installed dorothea from github. However, nothing sorted my issue. I tried get_progeny() and it works just fine. I browsed in opened issues but did not see someone facing similar problem, but maybe I missed it. I am relatively new to R so there may be something that I am missing. I appreciate your help.