Closed Diennguyen8290 closed 1 year ago
Hi,
Many thanks for the cool tool.
Please may I ask whether we can use DEGs results from DESeq2 pipeline as the input for Activity inference with Weighted Mean?
[contrast_acts <- run_wmean(mat=deg, net=net, .source='source', .target='target', .mor='weight', times = 100, minsize = 5)]
I was wondering if stat value of Deseq2 generated DEGs results can be used for that purpose.
Thank you.
Kind regards, Dien
Hi @Diennguyen8290,
Thanks for the kind words! Yes, the stat value of Deseq2 can be used for enrichment
Cheers!
Fab, many thanks @PauBadiaM
Hi,
Many thanks for the cool tool.
Please may I ask whether we can use DEGs results from DESeq2 pipeline as the input for Activity inference with Weighted Mean?
[contrast_acts <- run_wmean(mat=deg, net=net, .source='source', .target='target', .mor='weight', times = 100, minsize = 5)]
I was wondering if stat value of Deseq2 generated DEGs results can be used for that purpose.
Thank you.
Kind regards, Dien