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saezlab / decoupleR

R package to infer biological activities from omics data using a collection of methods.
https://saezlab.github.io/decoupleR/
GNU General Public License v3.0
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Omnipath not accessible with get_resource() #75

Closed quyaingo closed 1 year ago

quyaingo commented 1 year ago

Hello,

I tried to access resources in Omnipath with the functions get_resource, get_dorothea, and get_progeny, but only got the error:

[2023-03-09 17:32:34] [WARN] [OmnipathR] Failed to download https://omnipathdb.org/annotations?resources=SIGNOR&license=academic (attempt 1/3); error: HTTP error 500. [2023-03-09 17:32:39] [WARN] [OmnipathR] Failed to download https://omnipathdb.org/annotations?resources=SIGNOR&license=academic (attempt 2/3); error: HTTP error 500. [2023-03-09 17:32:44] [ERROR] [OmnipathR] Failed to download https://omnipathdb.org/annotations?resources=SIGNOR&license=academic (attempt 3/3); error: HTTP error 500. Error in open.connection(6L, "rb") : HTTP error 500.

I'm not sure if this is the decoupleR problem or Omnipath server problem. Should I contact Omnipath server administrator instead?

Many thanks in advance.

PauBadiaM commented 1 year ago

Hi @quyaingo,

It seems like there might be a problem with the OmniPath server. @deeenes could you take a look?

deeenes commented 1 year ago

@quyaingo Thanks for reporting and apologies for the inconvenience! Should be working again.