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saezlab / decoupler-py

Python package to perform enrichment analysis from omics data.
https://decoupler-py.readthedocs.io/
GNU General Public License v3.0
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Progeny pvals #122

Closed nicolebussola closed 4 months ago

nicolebussola commented 4 months ago

Hi, first of all thank you for this great tool. I was following the tutorial for footprint enrichment with PROGENy; the pvals outpupt by the mlm model are not "checked" but ideally I should consider a pathway to be active/inactive if the corresponding pvalue is significant, is that correct?

PauBadiaM commented 4 months ago

Hi @nicolebussola,

Thanks! Indeed, you can check if the corresponding p-value is significant to filter pathways.