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saezlab / decoupler-py

Python package to perform enrichment analysis from omics data.
https://decoupler-py.readthedocs.io/
GNU General Public License v3.0
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numba version 0.60.0 #135

Closed Intron7 closed 1 week ago

Intron7 commented 2 weeks ago

decoupler fails to import with numba version 0.60.0

https://github.com/scverse/rapids_singlecell/actions/runs/9552426465/job/26329883508

deeenes commented 2 weeks ago

See also #134

Intron7 commented 2 weeks ago

I only checked issues sorry. But it seems there are some more things broken.

If you want me to help with some of these issue let me know.

deeenes commented 1 week ago

Thanks @Intron7, Now we merged the PR above, and because numba won't support numpy 2.0 until Sept the earliest, we just had to pin numpy < 2.0. With that, everything should work like before.

Zethson commented 1 week ago

@deeenes could we get a release, please?

deeenes commented 1 week ago

Yes, @PauBadiaM are you doing a release tomorrow? Also, we have an old version in bioconda

PauBadiaM commented 1 week ago

@Zethson @Intron7 I've released the latest version with the fix: https://pypi.org/project/decoupler/1.7.0/ @deeenes the updated version can be found in conda-forge(this new version still needs to propagate) instead of bioconda