search

saezlab / decoupler-py

Python package to perform enrichment analysis from omics data.
https://decoupler-py.readthedocs.io/
GNU General Public License v3.0
157 stars 23 forks source link

Tutorial clustermap changed to Marsilea #96

Closed shuang1330 closed 7 months ago

shuang1330 commented 10 months ago

The clustermap plot in tutorial pseudobulk.ipynb with pyComplexHeatmap gave errors, changed it to using python package Marsilea for a more intuitive way of plotting complex clustermap

PauBadiaM commented 10 months ago

Oh wow, this looks much better indeed :+1:, thanks @shuang1330!

@demian1 have a look here :eyes: . I'll run some tests first but I think I'll merge this and change dc.plot_associations to use marsilea instead unless you see any disadvantage.

jan-engelmann commented 10 months ago

The only issue might be that marsilea is in beta mode and thus the API could change.