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saezlab / dorothea

R package to access DoRothEA's regulons
https://saezlab.github.io/dorothea/
GNU General Public License v3.0
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connection error when retrieve the data #70

Open dandancao2023 opened 10 months ago

dandancao2023 commented 10 months ago

After successfully installed the required R packages, I simply tried the retrieval of TF-targets using the command

net <- decoupleR::get_dorothea(levels = c('A', 'B', 'C', 'D'))

however, error occurs 'Error in open.connection(3L, "rb") : HTTP error 500.'

However to solve this?

PauBadiaM commented 8 months ago

Hi @dandancao2023,

Sorry for the delayed response, forgot to turn on notifications for this repo, next time better open an issue in the decoupleR one. If I remember correctly, at that time the Omnipath server was down, it should work now. Let me know if you need any help.