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saezlab / footprints

Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"
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20k gene assoc not better than 5k #9

Closed mschubert closed 9 years ago

mschubert commented 9 years ago

na.omit() for zscores leaves 5k genes, top assoc is p53 ~ 1e-19, some EGFR ~ 1e-14.

for 20k genes is is the same, that's a bit surprising