Improve spatial neighbours function

saezlab / liana-py

LIANA+: an all-in-one framework for cell-cell communication

http://liana-py.readthedocs.io/

GNU General Public License v3.0

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Closed dbdimitrov closed 3 months ago

dbdimitrov commented 4 months ago

I should implement a heuristic to estimate the spatial bandwidth automatically.

Also, replace squidpy, and just use my search with a threshold for outliers (such as those in the cornerns).

This should reduce the complexity for users and the number of dependencies