Correctly referred to PK tutorial for orthology conversion
Added batch_key and min_var_nbatches to control te way batches are selected in li.multi.lrs_to_views.
This might result in minor differences of how many interactions are considered per view, as I also changed the order of filtering.
Changed max_neighbours in li.ut.spatial_neighbors to be a fixed number (default=100), rather than a fraction of the spots as this was making RAM explode for large spatial formats.
Now published at Nat Cell Bio.
Correctly referred to PK tutorial for orthology conversion
Added
batch_key
andmin_var_nbatches
to control te way batches are selected inli.multi.lrs_to_views
. This might result in minor differences of how many interactions are considered per view, as I also changed the order of filtering.Changed
max_neighbours
inli.ut.spatial_neighbors
to be a fixed number (default=100), rather than a fraction of the spots as this was making RAM explode for large spatial formats.