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saezlab / liana-py

LIANA+: an all-in-one framework for cell-cell communication
http://liana-py.readthedocs.io/
GNU General Public License v3.0
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module 'liana.multi' has no attribute df_to_lr #146

Closed Elisa-blip closed 1 month ago

Elisa-blip commented 1 month ago

Hello, I am following the Differential Expression Analysis for CCC & Downstream Signalling Networks Vignette. I have my anndata and df with dge results ready, but I can not run li.multi.df_to_lr, as it tells me it does not exist.

I have installed liana with pip install liana[full], and done the same for decoupler, pydeseq2 and omnipath.

Elisa-blip commented 1 month ago

Solved on my own, I was installing the package in a conda environment with python 3.12. Solved by setting python=3.11 when creating the env.