Added ScSeqComm Method, implemented by @BaldanMatt (#68)
Added functions to query a metabolite-receptor interactions database (MetalinksDB), including:
=> li.rs.get_metalinks to get the database
=> li.rs.get_metalinks_values to get the distinct annotation values of the database
=> describe_metalinks to get a description of the database
Added a metabolite-mediated CCC tutorial in spatially-resolved multi-omics data (#45).
Changed hardcoded constants to be defined in _constants.py
Excluded CellChat from the default rank_aggregate method
Fixed return logic of SpatialBivariate
li.mt.process_scores is now exported to li.mt
Changed the default max_neighbours in li.ut.spatial_neighbors to 1/10 of the number of spots.
1.0.5 (25.02.2024)
Added ScSeqComm Method, implemented by @BaldanMatt (#68)
Added functions to query a metabolite-receptor interactions database (MetalinksDB), including: =>
li.rs.get_metalinksto get the database =>li.rs.get_metalinks_valuesto get the distinct annotation values of the database =>describe_metalinksto get a description of the databaseAdded a metabolite-mediated CCC tutorial in spatially-resolved multi-omics data (#45).
Changed hardcoded constants to be defined in _constants.py
Excluded CellChat from the default
rank_aggregatemethodFixed return logic of SpatialBivariate
li.mt.process_scoresis now exported toli.mtChanged the default
max_neighboursinli.ut.spatial_neighborsto 1/10 of the number of spots.