Closed sidrahmaryam-cyber closed 1 month ago
Hi @sidrahmaryam-cyber,
I assume that it's an issue with a confilict in testthat versions
A solution is to install liana with a fresh R version (e.g. conda environment)
See these issues: https://github.com/saezlab/liana/issues/73 https://github.com/nhanhocu/metamicrobiomeR/issues/4
Hope this helps. Daniel
Thank you so much for the response. However, I am still not able to install it. I tried various ways. I created conda environment, tried installing, and getting same error. Without the conda, I tried installing in head R, same issue. I followed the steps in the link, still same problem. :(
Regards, Sidrah
Hi @sidrahmaryam-cyber,
In a replicated issue the author said that this worked for them by installing via source - e.g. glone and install locally. Hope this helps.
as usual R error message may be confusing.
PB is a combination of using UTF8 char in DESCRIPTION and locale environment//support
just use plain ascii in DESCRIPTION file and installation goes smooth.
see:
> remotes::install_github("saezlab/liana")
Error: Failed to install 'unknown package' from GitHub:
Line starting 'Config/testthat/edit ...' is malformed!
versus
> remotes::install_github("EricDeveaud/liana")
I have addressed this in the update that I will push today.
Hello, I am trying to install liana using remotes::install_github('saezlab/liana')
However I face this issue: Error: Failed to install 'unknown package' from GitHub: Line starting 'Config/testthat/edit ...' is malformed!
Can you please let me know the possible reason or solution. Thank you so much in advance.