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saezlab / liana

LIANA: a LIgand-receptor ANalysis frAmework
https://saezlab.github.io/liana/
GNU General Public License v3.0
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Error with liana_bysample #103

Closed YYYYYWWWYYYYYY closed 1 year ago

YYYYYWWWYYYYYY commented 1 year ago

Hello, I was running liana_bysample and the problem happened : Error: cannot allocate vector of size 8.4 Mb

I gsub the task with vf=30g,h_vmem=50g. I also run liana_wrap with the same data by sample, and the task was succeed. Could you please tell me how to avoid the error when I use liana_bysample?

Thank you !

dbdimitrov commented 1 year ago

Hi @YYYYYWWWYYYYYY,

I'm not sure if I can help much without a reproducible example. Happy to explore it further if I can reproduce your error.

Daniel