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saezlab / liana

LIANA: a LIgand-receptor ANalysis frAmework
https://saezlab.github.io/liana/
GNU General Public License v3.0
160 stars 28 forks source link

Downloading Liana in R #109

Closed sakinaamin closed 1 year ago

sakinaamin commented 1 year ago

remotes::install_github('saezlab/liana') Error: Failed to install 'unknown package' from GitHub: Line starting 'Config/testthat/edit ...' is malformed!

I am unable to download the package in R due to the above error, could you please suggest how to troubleshoot?

chkohler commented 1 year ago

Problem confirmed on a fresh R 4.3.0 installation running Debian Buster:

library(remotes) remotes::install_github('saezlab/liana', upgrade="never", ref="master") Error: Failed to install 'unknown package' from GitHub: Line starting 'Config/testthat/edit ...' is malformed!

remotes::install_github('saezlab/liana') Error: Failed to install 'unknown package' from GitHub: Line starting 'Config/testthat/edit ...' is malformed!

`

sessionInfo() R version 4.3.0 (2023-04-21) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Debian GNU/Linux 10 (buster)

Matrix products: default BLAS/LAPACK: /linux/mkl/lib/intel64_lin/libmkl_gf_lp64.so; LAPACK version 3.8.0

locale: [1] C

time zone: Europe/Berlin tzcode source: system (glibc)

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] remotes_2.4.2

loaded via a namespace (and not attached): [1] compiler_4.3.0 tools_4.3.0 curl_5.0.0

`

update 2023-05-15 package installation from source tar ball works as expected.