LIANA for bulk RNA seq with separated cell samples

[ngutrinh]

Can I apply LIANA bulk RNA seq with separated cell samples?

[dbdimitrov]

Hi,

Do you mean sorted cells according to cell types then sequenced together?

If so, liana would not be directly applicable, however there is an example of using the liana database for bulk here: https://decoupler-py.readthedocs.io/en/latest/notebooks/bulk.html

Hope this helps.

[ngutrinh]

Yes, I have sorted cells according to cell types The link is great. Thank you so much!

[dbdimitrov]

👌