Error in installation - Githubissues

rstorch01 commented 1 year ago

I am trying to install liana in R/4.0.2 using remotes::install_github("saezlab/liana")

The installation fails with: Error: object ‘homologene_download’ is not exported by 'namespace:OmnipathR' Execution halted

I had previous installed OmnipathR using Biocmanager::install("OmnipathR"). Please let me know how I can resolve this issue.

dbdimitrov commented 1 year ago

Hi @rstorch01,

Can you try installing OmnipathR also from Github? This should resolve it. Let me know if it doesn't.

Daniel

rstorch01 commented 1 year ago

The install did not work:

installing source package ‘OmnipathR’ ... using staged installation R inst byte-compile and prepare package for lazy loading Error: object ‘join_by’ is not exported by 'namespace:dplyr' Execution halted ERROR: lazy loading failed for package ‘OmnipathR’
removing ‘/usr/local/R/4.0.2/lib64/R/library/OmnipathR’
restoring previous ‘/usr/local/R/4.0.2/lib64/R/library/OmnipathR’ Warning message: In i.p(...) : installation of package ‘/tmp/Rtmpcg2EQa/file618330fc912b/OmnipathR_3.9.6.tar.gz’ had non-zero exit status

dbdimitrov commented 11 months ago

Hmm, this seems like an OmniPathR issue @deeenes :pray:

saezlab / liana