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saezlab / liana

LIANA: a LIgand-receptor ANalysis frAmework
https://saezlab.github.io/liana/
GNU General Public License v3.0
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Any domcuments for CCC method developers? #129

Closed shenscore closed 2 months ago

shenscore commented 11 months ago

In other word, is there anyway to benchmark a new CCC method by using LIANA?

dbdimitrov commented 9 months ago

Hi @shenscore,

Likely the easiest way would be via the OpenProblems repo, where we reproduced and extended the benchmark described in the liana manuscript: https://github.com/openproblems-bio/openproblems/tree/main/openproblems/tasks/_cell_cell_communication

Hope this helps :)