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saezlab / liana

LIANA: a LIgand-receptor ANalysis frAmework
https://saezlab.github.io/liana/
GNU General Public License v3.0
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LIANA's development continous as LIANA+ #148

Open dbdimitrov opened 2 months ago

dbdimitrov commented 2 months ago

Development of LIANA keeps going but most of the efforts are currently only in Python - to be ported also to R in the future.

Please check: https://liana-py.readthedocs.io/en/latest/ and https://github.com/saezlab/liana-py

While we work on porting LIANA+ to R, for easy conversion from R to Python, we recommend using the Zellkonverter.

One can save a SingleCellExperiment object using the zellkonverter:writeH5AD function, and reload the resulting AnnData in Python

Converting from Seurat to SingleCellExperiment is also straightforward using the Seurat:as.SingleCellExperiment function.